Showing posts with label data mining. Show all posts
Showing posts with label data mining. Show all posts

Wednesday, March 25, 2009

Integrating BioMart queries into BioConductor with the biomaRt package

I've just realized the considerable power and convenience of a web-based bioinformatic resource I have overlooked in the past: biomart.org.

What gets my attention now is the ability to integrate BioMart queries right into your BioConductor pipeline, with a package called biomaRt

The Seattle 2009 BioConductor workshop looks like it was great -- sadly, I missed it. But you can still access some presentation materials on biomaRt.

Installation of biomaRt is accomplished like any other BioConductor pacakge:

    source("http://bioconductor.org/biocLite.R")
biocLite("biomaRt")
I am looking forward to learning more about these resources.