Wednesday, March 6, 2013

command line reverse complement sequence in linux shell

Sometimes it seems like BSD / GNU / Linux folks thought of everything.

echo AATGATACGGCGACCACCGG | rev | tr ATGC TACG
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4 comments:

  1. AnonymousJuly 30, 2015 at 1:02 PM

    Thank you! This is great for my current quick searches.

    ReplyDelete
  2. Victor_TSeptember 18, 2015 at 10:50 AM

    Finding this out made my day a lot better!

    ReplyDelete
  3. MatthieuFebruary 12, 2016 at 2:00 AM

    Very nice indeed!
    I would add
    echo "AG" | rev | tr ATGCatgcNn TACGtacgNn

    ReplyDelete
  4. UnknownJuly 20, 2018 at 10:45 AM

    Thank you!

    ReplyDelete

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