A roll call of my preferred bioinformatic tools
A somewhat useless post, except that it helps me to remember a few of the lesser used (but occasionally very, very handy) pieces of software, like FLASH of Flexbar.
A somewhat useless post, except that it helps me to remember a few of the lesser used (but occasionally very, very handy) pieces of software, like FLASH of Flexbar.
- NGS aligner: bowtie2
- SAM manipulation: samtools (of course)
- Paired-read joiner: FLASH: Fast Length Adjustment of SHort reads
- Adapter trimmer: flexbar
- Short read clustering: cd-hit
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